STRINGSTRING
Solyc00g029080.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g029080.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g029080.1.1annotation not available (956 aa)    
Predicted Functional Partners:
101264414
Transducin family protein / WD-40 repeat family protein (989 aa)
     
 
  0.984
101245831
5’-3’ exonuclease family protein (544 aa)
   
 
  0.980
Solyc02g071530.1.1
5’-3’ exonuclease family protein (742 aa)
   
 
  0.980
101259141
ARM repeat superfamily protein (1140 aa)
     
 
  0.939
Solyc07g042790.1.1
annotation not available (1452 aa)
   
 
  0.932
Solyc06g034070.1.1
annotation not available (1557 aa)
   
 
  0.932
Solyc03g044840.1.1
annotation not available (897 aa)
   
 
  0.932
101256637
DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (1086 aa)
     
 
  0.930
101248457
Uncharacterized protein; Single-stranded DNA endonuclease family protein (600 aa)
   
 
  0.902
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a [...] (382 aa)
   
 
  0.902
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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