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STRINGSTRING
Solyc00g029290.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g029290.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g029290.1.1annotation not available (376 aa)    
Predicted Functional Partners:
Solyc06g053330.2.1
Uncharacterized protein; DNA binding;DNA-directed RNA polymerases (621 aa)
       
 
  0.727
101268740
Histone H2A protein 9 (135 aa)
     
 
  0.708
Solyc06g084090.2.1
annotation not available (203 aa)
     
 
  0.708
Solyc06g010200.2.1
annotation not available (1613 aa)
     
 
  0.673
Solyc11g062010.1.1
Uncharacterized protein; P-loop containing nucleoside triphosphate hydrolases superfamily protein (2667 aa)
     
 
  0.671
Solyc10g006770.2.1
annotation not available (838 aa)
     
 
  0.661
101260294
annotation not available (798 aa)
     
 
  0.661
Solyc01g101030.2.1
annotation not available (1120 aa)
     
 
  0.661
101260671
annotation not available (1067 aa)
     
 
  0.661
Solyc02g087700.2.1
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (72 aa)
       
 
  0.652
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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