STRINGSTRING
Solyc00g042140.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g042140.1.1" - Annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g042140.1.1Annotation not available (399 aa)    
Predicted Functional Partners:
Solyc00g042130.1.1
Annotation not available (704 aa)
 
0.999
Solyc12g056830.1.1
Uncharacterized protein (250 aa)
   
  0.999
Solyc05g050500.1.1
Uncharacterized protein (241 aa)
   
  0.999
Solyc01g087120.2.1
Uncharacterized protein (239 aa)
   
  0.999
Solyc02g012010.1.1
Uncharacterized protein (101 aa)
 
  0.999
Solyc02g012000.1.1
Uncharacterized protein (106 aa)
 
  0.999
Solyc07g021380.1.1
Uncharacterized protein (121 aa)
   
  0.999
Solyc11g051170.1.1
Uncharacterized protein (91 aa)
 
  0.999
Solyc06g072540.1.1
Uncharacterized protein (108 aa)
 
  0.999
Solyc10g044540.1.1
Uncharacterized protein (293 aa)
 
  0.999
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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