STRINGSTRING
Solyc00g053440.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g053440.2.1" - Annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g053440.2.1Annotation not available (156 aa)    
Predicted Functional Partners:
Solyc03g043660.2.1
Uncharacterized protein (1101 aa)
     
   
  0.460
Solyc02g091410.2.1
Uncharacterized protein (1110 aa)
     
   
  0.460
Solyc01g056910.1.1
Uncharacterized protein (72 aa)
     
   
  0.460
Solyc10g081300.1.1
Uncharacterized protein (320 aa)
           
  0.453
MCA
Metacaspase 1 (416 aa)
           
  0.453
Solyc05g052130.2.1
Uncharacterized protein (362 aa)
           
  0.453
Solyc03g094160.2.1
Uncharacterized protein (361 aa)
           
  0.453
Solyc01g105320.2.1
Uncharacterized protein (355 aa)
           
  0.453
MCA2
Metacaspase 2 (EC-3.4.22.-) (362 aa)
           
  0.453
Solyc01g105300.2.1
Uncharacterized protein (361 aa)
           
  0.453
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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