STRINGSTRING
Solyc00g071590.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g071590.1.1" - Annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g071590.1.1Annotation not available (93 aa)    
Predicted Functional Partners:
Solyc00g042130.1.1
Annotation not available (704 aa)
     
      0.628
Solyc00g042140.1.1
Annotation not available (399 aa)
       
      0.626
Solyc04g072060.2.1
Uncharacterized protein (204 aa)
     
 
  0.609
Solyc04g051680.2.1
Uncharacterized protein (219 aa)
     
 
  0.609
Solyc03g120750.2.1
Uncharacterized protein (205 aa)
     
 
  0.609
Solyc01g109520.2.1
Uncharacterized protein (206 aa)
     
 
  0.609
Rab1A
Small GTP-binding protein (203 aa)
     
  0.559
Solyc05g053940.2.1
Uncharacterized protein (203 aa)
     
  0.559
Rab1C
Small GTP-binding protein (203 aa)
     
  0.559
Rab1B
Small GTP-binding protein (202 aa)
     
  0.559
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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