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STRINGSTRING
Solyc00g088080.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g088080.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g088080.1.1annotation not available (178 aa)    
Predicted Functional Partners:
101263129
annotation not available (546 aa)
   
 
  0.890
101256508
Uncharacterized protein; GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (536 aa)
   
 
  0.887
101268074
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (155 aa)
   
        0.874
101256716
adenosine/AMP deaminase family protein (366 aa)
   
 
  0.867
Solyc00g031040.1.1
annotation not available (294 aa)
   
 
  0.867
101246000
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1 (194 aa)
     
        0.863
Solyc02g044040.1.1
annotation not available (250 aa)
   
   
  0.857
101250451
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
        0.849
101261490
annotation not available (314 aa)
     
        0.846
101268785
Dihydroorotate dehydrogenase (quinone), mitochondrial; Pyrimidine d; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily (457 aa)
   
   
  0.820
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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