STRINGSTRING
Solyc00g088080.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g088080.1.1" - Annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g088080.1.1Annotation not available (178 aa)    
Predicted Functional Partners:
Solyc08g081150.2.1
Uncharacterized protein (536 aa)
   
 
  0.892
Solyc10g005310.2.1
Uncharacterized protein (366 aa)
     
  0.826
Solyc00g031040.1.1
Annotation not available (294 aa)
     
  0.826
Solyc11g068830.1.1
Uncharacterized protein (477 aa)
   
 
  0.813
Solyc07g006530.2.1
Adenylosuccinase (546 aa)
   
  0.808
Solyc10g080320.1.1
Adenylosuccinate synthetase ; Plays an important role in the de novo pathway of purine nucleotide biosynthesis (507 aa)
     
  0.761
Solyc02g085520.2.1
Adenylosuccinate synthetase ; Plays an important role in the de novo pathway of purine nucleotide biosynthesis (581 aa)
     
  0.761
Solyc09g014770.2.1
Uncharacterized protein (832 aa)
     
  0.675
Solyc05g006910.2.1
Uncharacterized protein (886 aa)
     
  0.675
Solyc10g005880.2.1
Uridine kinase (422 aa)
   
   
  0.655
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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