STRINGSTRING
Solyc00g104730.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g104730.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g104730.1.1annotation not available (199 aa)    
Predicted Functional Partners:
101244077
Pectin lyase-like superfamily protein (471 aa)
           
  0.686
Solyc03g116580.2.1
annotation not available (437 aa)
           
  0.612
101260491
annotation not available (88 aa)
           
  0.589
Solyc12g009420.1.1
Pectin lyase-like superfamily protein (407 aa)
           
  0.575
101244370
Endoglucanase; CEL6=CELLULASE 6 (616 aa)
           
  0.561
Cel3
Endoglucanase; Endo-1,4-beta-glucanase (617 aa)
           
  0.561
Solyc12g044750.1.1
Pectin lyase-like superfamily protein (382 aa)
         
  0.557
101250060
Uncharacterized protein; COSII_At1g16210 (231 aa)
           
  0.520
101255601
Vacuolar protein sorting 11 (954 aa)
     
   
  0.505
101265512
annotation not available (467 aa)
     
   
  0.491
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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