STRINGSTRING
Solyc00g130180.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g130180.1.1" - Annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g130180.1.1Annotation not available (175 aa)    
Predicted Functional Partners:
Solyc00g090120.1.1
Annotation not available (193 aa)
   
          0.527
Solyc00g050020.1.1
Annotation not available (304 aa)
   
          0.481
Solyc00g134830.1.1
Annotation not available (512 aa)
   
          0.475
Solyc00g139760.1.1
Annotation not available (724 aa)
   
          0.457
Solyc00g113730.1.1
Annotation not available (167 aa)
   
          0.443
Solyc00g030210.1.1
Annotation not available (1147 aa)
   
          0.436
Solyc00g113750.1.1
Annotation not available (290 aa)
   
          0.419
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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