STRINGSTRING
Solyc00g138060.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g138060.2.1" - Annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g138060.2.1Annotation not available (311 aa)    
Predicted Functional Partners:
Solyc08g078330.2.1
Uncharacterized protein (304 aa)
   
          0.507
Solyc02g071450.2.1
Uncharacterized protein (360 aa)
   
          0.497
Solyc08g080040.2.1
Uncharacterized protein (418 aa)
   
          0.496
Solyc11g072110.1.1
Uncharacterized protein (357 aa)
   
          0.495
Solyc02g071490.2.1
Uncharacterized protein (361 aa)
   
          0.494
Solyc02g071470.2.1
Uncharacterized protein (360 aa)
   
          0.490
NIA
Nitrate reductase [NADH] ; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (912 aa)
     
   
  0.489
Solyc02g093070.2.1
Uncharacterized protein (330 aa)
   
          0.484
Solyc02g071400.2.1
Uncharacterized protein (340 aa)
   
          0.484
Solyc02g071440.2.1
Uncharacterized protein (350 aa)
   
          0.483
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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