• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc00g139760.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g139760.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g139760.1.1annotation not available (724 aa)    
Predicted Functional Partners:
Solyc01g081050.2.1
Uncharacterized protein; AMP-dependent synthetase and ligase family protein (1206 aa)
     
 
  0.695
101260578
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family (420 aa)
           
  0.517
101250511
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family (388 aa)
           
  0.517
Solyc00g025540.1.1
annotation not available (379 aa)
           
  0.499
101262917
annotation not available (285 aa)
     
 
  0.473
109119320
annotation not available (380 aa)
     
 
  0.473
101253940
annotation not available (351 aa)
       
 
  0.450
101244415
annotation not available (325 aa)
       
 
  0.450
101254617
annotation not available (386 aa)
       
 
  0.450
101253301
Uncharacterized protein; Pyridoxal-5’-phosphate-dependent enzyme family protein (421 aa)
       
 
  0.450
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (16%) [HD]