STRINGSTRING
Solyc00g170510.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g170510.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g170510.1.1annotation not available (292 aa)    
Predicted Functional Partners:
LAT56
Probable pectate lyase P56; Might be needed during pollen development and tube growth (398 aa)
 
   
  0.776
Solyc09g005850.2.1
annotation not available (326 aa)
 
   
  0.770
101267397
Pectin lyase-like superfamily protein (336 aa)
 
   
  0.769
101257960
annotation not available (456 aa)
 
   
  0.768
101250914
annotation not available (439 aa)
 
   
  0.767
101260096
annotation not available (446 aa)
 
   
  0.762
101257697
Pectin lyase-like superfamily protein (483 aa)
 
   
  0.760
Solyc11g008140.1.1
annotation not available (449 aa)
 
   
  0.753
101246909
annotation not available (435 aa)
 
   
  0.752
101264933
annotation not available (494 aa)
 
   
  0.750
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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