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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc00g180440.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g180440.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g180440.1.1annotation not available (84 aa)    
Predicted Functional Partners:
Solyc11g021130.1.1
annotation not available (285 aa)
   
 
  0.974
Solyc04g049260.1.1
annotation not available (166 aa)
   
 
  0.974
101252000
Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family (155 aa)
   
 
  0.970
Solyc00g026870.1.1
annotation not available (465 aa)
   
 
  0.965
rps16
30S ribosomal protein S16 (132 aa)
     
 
  0.954
Solyc11g010180.1.1
annotation not available (215 aa)
     
      0.936
101250811
Ribosomal protein L21 (212 aa)
     
 
  0.918
101250359
Ribosomal protein L21 (264 aa)
     
 
  0.918
Solyc07g008270.2.1
Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family (87 aa)
     
 
  0.897
Solyc04g014390.2.1
Mitochondrial ribosomal protein L51/S25/CI-B8 family protein (175 aa)
     
      0.896
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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