STRINGSTRING
Solyc00g180440.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g180440.1.1" - Annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g180440.1.1Annotation not available (84 aa)    
Predicted Functional Partners:
Solyc07g006000.2.1
50S ribosomal protein L35 (155 aa)
   
  0.987
Solyc00g026870.1.1
Annotation not available (465 aa)
   
  0.985
Solyc11g071320.1.1
Uncharacterized protein (146 aa)
     
  0.975
Solyc11g068820.1.1
Uncharacterized protein (206 aa)
     
  0.975
Solyc08g068220.2.1
Uncharacterized protein (146 aa)
     
  0.975
Solyc08g078010.2.1
Uncharacterized protein (214 aa)
   
  0.974
Solyc01g008340.2.1
Putative L19 ribosomal protein (250 aa)
   
  0.974
Solyc08g067950.2.1
Uncharacterized protein (160 aa)
   
  0.969
Solyc06g082760.2.1
Uncharacterized protein (203 aa)
   
  0.969
Solyc06g082750.2.1
Uncharacterized protein (203 aa)
   
  0.969
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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