STRINGSTRING
Solyc00g184350.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g184350.2.1" - annotation not available in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g184350.2.1annotation not available (123 aa)    
Predicted Functional Partners:
101264859
Uncharacterized protein; Structural constituent of nuclear pore (758 aa)
     
 
  0.928
Solyc12g049410.1.1
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport; LOCATED IN- nuclear pore; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nuclear pore protein 84/107 (InterPro-IPR007252); Has 5399 /.../ hits to 5001 proteins in 612 species- Archae - 19; Bacteria - 730; Metazoa - 2186; Fungi - 823; Plants - 382; Viruses - 37; Other Eukaryotes - 1222 (source- NCBI BLink) (1016 aa)
     
 
  0.813
101261437
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein; Belongs to the WD repeat SEC13 family (325 aa)
     
 
  0.715
Solyc08g006420.2.1
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- Prefoldin (InterPro-IPR009053); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G24460.1); Has 194354 Blast hits to 66887 proteins in 3244 species- Archae - 3688; Bacteria - 38556; Metazoa - 84828; Fu /.../17265; Plants - 10589; Viruses - 805; Other Eukaryotes - 38623 (source- NCBI BLink) (2617 aa)
           
  0.637
101260798
Protein of unknown function (DUF3414) (1874 aa)
     
   
  0.624
101262406
annotation not available (862 aa)
     
   
  0.622
101268250
DNA helicase; Minichromosome maintenance (MCM2/3/5) family protein; Belongs to the MCM family (787 aa)
     
      0.616
101253565
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- nucleolus; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 13 growth stages; Has 2922 Blast hits to 2454 proteins in 263 species- Ar /.../ 0; Bacteria - 57; Metazoa - 1043; Fungi - 654; Plants - 388; Viruses - 11; Other Eukaryotes - 769 (source- NCBI BLink) (388 aa)
     
   
  0.614
101258284
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown functi /.../3593 (InterPro-IPR021995); Has 301 Blast hits to 301 proteins in 96 species- Archae - 0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 114 (source- NCBI BLink) (178 aa)
     
 
  0.597
101253512
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro-IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Ot /.../karyotes - 2996 (source- NCBI BLink) (719 aa)
     
 
  0.596
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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