STRINGSTRING
Solyc00g277510.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g277510.1.1" - Annotation not available in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g277510.1.1Annotation not available (66 aa)    
Predicted Functional Partners:
Solyc01g011480.1.1
Uncharacterized protein (85 aa)
   
          0.525
Solyc12g038080.1.1
Uncharacterized protein (74 aa)
   
          0.519
Solyc07g008990.1.1
Uncharacterized protein (85 aa)
   
          0.519
Solyc12g027550.1.1
Uncharacterized protein (72 aa)
   
          0.518
Solyc10g018840.1.1
Uncharacterized protein (86 aa)
   
          0.518
Solyc09g016930.1.1
Uncharacterized protein (132 aa)
   
          0.518
Solyc00g230080.1.1
Annotation not available (118 aa)
   
          0.518
Solyc09g031730.1.1
Uncharacterized protein (81 aa)
   
          0.517
Solyc10g017940.1.1
Uncharacterized protein (200 aa)
   
          0.516
psbA
Photosystem II protein D1; Photosystem II (PSII) is a light-driven water- plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors (53 aa)
   
          0.515
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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