STRINGSTRING
Solyc00g304030.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc00g304030.1.1" - Annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc00g304030.1.1Annotation not available (1080 aa)    
Predicted Functional Partners:
Solyc05g056260.2.1
Uncharacterized protein (342 aa)
   
   
  0.680
Solyc00g055960.1.1
Annotation not available (428 aa)
 
 
  0.672
ETR6
Ethylene receptor (754 aa)
   
 
  0.623
phyA
Phytochrome ; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1123 aa)
   
 
  0.616
PHYB1
Phytochrome B1 ; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose- bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reduc [...] (1131 aa)
   
 
  0.616
Solyc01g091580.2.1
Uncharacterized protein (368 aa)
   
   
  0.615
Solyc10g080080.1.1
Thioredoxin reductase (543 aa)
   
   
  0.609
Solyc04g016010.2.1
Uncharacterized protein (537 aa)
   
   
  0.609
Solyc12g009990.1.1
Uncharacterized protein (619 aa)
         
  0.605
Solyc03g098140.2.1
Uncharacterized protein (343 aa)
   
   
  0.592
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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