Solyc01g005340.2.1 protein (Solanum lycopersicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Solyc01g005340.2.1

Uncharacterized protein (523 aa)

Predicted Functional Partners:

Solyc10g007420.2.1

0.845

Solyc10g007240.1.1

0.845

Solyc10g007230.1.1

0.845

Solyc01g102680.2.1

0.843

Solyc12g098100.1.1

0.843

Solyc12g008500.1.1

0.843

Solyc12g008400.1.1

0.843

Solyc10g085120.1.1

0.843

Solyc10g079170.1.1

0.843

Solyc09g098420.1.1

0.843

Your Current Organism:

Solanum lycopersicum

NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Solyc01g005340.2.1	Solyc01g102680.2.1	Uncharacterized protein	Uncharacterized protein	0.843
Solyc01g005340.2.1	Solyc09g098420.1.1	Uncharacterized protein	Uncharacterized protein	0.843
Solyc01g005340.2.1	Solyc10g007230.1.1	Uncharacterized protein	Uncharacterized protein	0.845
Solyc01g005340.2.1	Solyc10g007240.1.1	Uncharacterized protein	Uncharacterized protein	0.845
Solyc01g005340.2.1	Solyc10g007420.2.1	Uncharacterized protein	Uncharacterized protein	0.845
Solyc01g005340.2.1	Solyc10g079170.1.1	Uncharacterized protein	Uncharacterized protein	0.843
Solyc01g005340.2.1	Solyc10g085120.1.1	Uncharacterized protein	Uncharacterized protein	0.843
Solyc01g005340.2.1	Solyc12g008400.1.1	Uncharacterized protein	Uncharacterized protein	0.843
Solyc01g005340.2.1	Solyc12g008500.1.1	Uncharacterized protein	Uncharacterized protein	0.843
Solyc01g005340.2.1	Solyc12g098100.1.1	Uncharacterized protein	Uncharacterized protein	0.843
Solyc01g102680.2.1	Solyc01g005340.2.1	Uncharacterized protein	Uncharacterized protein	0.843
Solyc01g102680.2.1	Solyc09g098420.1.1	Uncharacterized protein	Uncharacterized protein	0.829
Solyc01g102680.2.1	Solyc10g007230.1.1	Uncharacterized protein	Uncharacterized protein	0.967
Solyc01g102680.2.1	Solyc10g007240.1.1	Uncharacterized protein	Uncharacterized protein	0.967
Solyc01g102680.2.1	Solyc10g007420.2.1	Uncharacterized protein	Uncharacterized protein	0.967
Solyc01g102680.2.1	Solyc10g079170.1.1	Uncharacterized protein	Uncharacterized protein	0.829
Solyc01g102680.2.1	Solyc10g085120.1.1	Uncharacterized protein	Uncharacterized protein	0.829
Solyc01g102680.2.1	Solyc12g008400.1.1	Uncharacterized protein	Uncharacterized protein	0.829
Solyc01g102680.2.1	Solyc12g008500.1.1	Uncharacterized protein	Uncharacterized protein	0.829
Solyc01g102680.2.1	Solyc12g098100.1.1	Uncharacterized protein	Uncharacterized protein	0.829

page 1 of 6

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2018

Credits

Access

Info

About