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STRINGSTRING
Solyc01g005440.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g005440.2.1" - Jasmonate ZIM-domain protein 3 in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g005440.2.1Jasmonate ZIM-domain protein 3 (309 aa)    
Predicted Functional Partners:
MYC1
annotation not available (464 aa)
     
 
  0.888
Coi1
Coronatine-insensitive 1 (603 aa)
         
  0.861
101251254
annotation not available (351 aa)
           
  0.733
LOX1.1
Linoleate 9S-lipoxygenase A; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. It catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure (860 aa)
           
  0.730
Solyc01g103600.2.1
annotation not available (129 aa)
     
   
  0.706
101247936
annotation not available (216 aa)
     
   
  0.644
JA3
annotation not available (689 aa)
     
 
  0.624
aoc
Allene oxide cyclase; Allene oxide cylase (244 aa)
     
   
  0.534
GGPS1
Uncharacterized protein; Geranylgeranyl pyrophosphate synthase 1 ; Belongs to the FPP/GGPP synthase family (365 aa)
           
  0.532
101263193
annotation not available (200 aa)
           
  0.449
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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