STRINGSTRING
Solyc01g005810.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g005810.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g005810.2.1Uncharacterized protein (302 aa)    
Predicted Functional Partners:
Solyc11g020820.1.1
2’-O-ribose RNA methyltransferase SPB1 homolog ; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (817 aa)
     
      0.994
Solyc11g020810.1.1
2’-O-ribose RNA methyltransferase SPB1 homolog ; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (829 aa)
     
      0.994
Solyc10g046930.1.1
Uncharacterized protein (766 aa)
     
      0.994
Solyc11g066630.1.1
Uncharacterized protein (145 aa)
     
      0.994
Solyc06g074720.2.1
Uncharacterized protein (219 aa)
     
      0.994
Solyc01g103740.2.1
Uncharacterized protein (504 aa)
     
 
  0.984
Solyc01g103720.2.1
Uncharacterized protein (99 aa)
     
 
  0.984
Solyc11g066280.1.1
Uncharacterized protein (335 aa)
     
      0.984
Solyc04g016380.2.1
Uncharacterized protein (312 aa)
     
      0.983
Solyc07g017940.1.1
Uncharacterized protein (589 aa)
     
      0.982
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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