STRINGSTRING
Solyc01g006460.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g006460.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g006460.1.1Uncharacterized protein (358 aa)    
Predicted Functional Partners:
Solyc05g051680.2.1
Uncharacterized protein (1054 aa)
     
  0.974
Solyc01g087720.2.1
Uncharacterized protein (1050 aa)
     
  0.972
Solyc10g018870.1.1
Uncharacterized protein (175 aa)
     
  0.964
Solyc07g062780.2.1
Uncharacterized protein (255 aa)
     
  0.964
Solyc01g006210.2.1
Uncharacterized protein (312 aa)
     
  0.962
Solyc06g073780.2.1
SMC3 (1229 aa)
     
  0.858
Solyc06g083870.2.1
SMC1 (1218 aa)
     
  0.853
Solyc03g093260.2.1
Uncharacterized protein (552 aa)
     
  0.830
Solyc03g093250.1.1
Uncharacterized protein (647 aa)
     
  0.830
Solyc02g087980.2.1
Structural maintenance of chromosomes protein (1246 aa)
     
  0.809
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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