STRINGSTRING
Solyc01g006880.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g006880.2.1" - SET domain protein 25 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g006880.2.1SET domain protein 25 (1596 aa)    
Predicted Functional Partners:
Solyc08g007710.2.1
Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G56420.1); Has 54 Blast hits to 53 proteins in 13 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source /.../ BLink) (188 aa)
       
 
  0.947
Solyc01g096950.2.1
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (523 aa)
     
 
  0.927
Solyc11g065370.1.1
Uncharacterized protein; TRAUCO (446 aa)
     
 
  0.927
Solyc06g010200.2.1
annotation not available (1613 aa)
     
 
  0.927
101268740
Histone H2A protein 9 (135 aa)
     
 
  0.919
101257458
Uncharacterized protein; Relative of early flowering 6 (1252 aa)
     
 
  0.906
101249316
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (314 aa)
     
 
  0.868
Solyc12g035360.1.1
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (333 aa)
       
 
  0.837
101258611
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (332 aa)
       
 
  0.837
101263337
Protein arginine methyltransferase 10; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N- methyltransferase family (371 aa)
       
 
  0.829
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (17%) [HD]