STRINGSTRING
Solyc01g008560.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g008560.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g008560.2.1Uncharacterized protein (531 aa)    
Predicted Functional Partners:
Solyc08g082830.2.1
Uncharacterized protein (731 aa)
   
 
  0.944
Solyc07g065590.2.1
Nicotinate-nucleotide adenylyltransferase (251 aa)
   
 
  0.929
Solyc07g062150.2.1
Uncharacterized protein (314 aa)
         
  0.904
Solyc06g075080.2.1
Uncharacterized protein (458 aa)
     
 
    0.900
Solyc06g060060.2.1
Uncharacterized protein (458 aa)
   
   
0.827
Solyc11g005100.1.1
Uncharacterized protein (826 aa)
         
0.820
Solyc00g030210.1.1
Annotation not available (1147 aa)
         
  0.501
Solyc00g050030.1.1
Annotation not available (702 aa)
         
  0.490
Solyc05g056260.2.1
Uncharacterized protein (342 aa)
         
  0.489
Solyc10g080080.1.1
Thioredoxin reductase (543 aa)
         
  0.486
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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