STRINGSTRING
Solyc01g009120.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g009120.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g009120.2.1Uncharacterized protein (204 aa)    
Predicted Functional Partners:
Solyc02g089970.2.1
Uncharacterized protein (1509 aa)
   
  0.964
Solyc11g067020.1.1
Histone deacetylase (430 aa)
       
  0.950
Solyc09g091440.2.1
Histone deacetylase (498 aa)
       
  0.950
Solyc06g071680.2.1
Histone deacetylase (471 aa)
       
  0.950
Solyc03g112410.1.1
Histone deacetylase (449 aa)
       
  0.950
Solyc09g098260.1.1
Uncharacterized protein (588 aa)
   
  0.894
Solyc03g112690.1.1
Uncharacterized protein (644 aa)
   
  0.894
Solyc03g083410.2.1
Uncharacterized protein (981 aa)
   
  0.894
Solyc01g095890.2.1
Uncharacterized protein (1048 aa)
   
  0.894
Solyc11g020290.1.1
Uncharacterized protein (139 aa)
     
  0.860
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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