STRINGSTRING
Solyc01g009650.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g009650.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g009650.1.1annotation not available (91 aa)    
Predicted Functional Partners:
COP1
Uncharacterized protein; COP1 homolog (677 aa)
       
 
  0.830
101249698
annotation not available (672 aa)
       
 
  0.830
HY5
Transcription factor HY5; Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light- induced genes (158 aa)
       
 
  0.786
101249027
SPA (suppressor of phyA-105) protein family (1019 aa)
     
 
  0.582
phyA
Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1123 aa)
           
  0.563
101254575
Uncharacterized protein; Splicing factor-related (509 aa)
     
 
  0.419
Solyc11g008140.1.1
annotation not available (449 aa)
           
  0.410
101257697
Pectin lyase-like superfamily protein (483 aa)
           
  0.410
101264933
annotation not available (494 aa)
           
  0.410
101260911
annotation not available (504 aa)
           
  0.410
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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