• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc01g010470.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g010470.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g010470.2.1annotation not available (185 aa)    
Predicted Functional Partners:
Solyc02g091530.2.1
5’-AMP-activated protein kinase-related (367 aa)
           
  0.763
101246672
Unknown protein; LOCATED IN- chloroplast; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G14970.1); Has 605 Blast hits to 425 proteins in 102 species- Archa /.../ Bacteria - 300; Metazoa - 25; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 191 (source- NCBI BLink) (375 aa)
           
  0.763
100316881
Uncharacterized protein; Starch synthase IV (1001 aa)
       
 
  0.708
MFP1
MAR-binding filament-like protein 1; Binds DNA. Interacts with chromatin via matrix attachment regions (MARs). Likely to participate in nuclear architecture by connecting chromatin with the nuclear matrix and potentially with the nuclear envelope (717 aa)
           
  0.685
101268619
annotation not available (396 aa)
     
 
  0.633
SNF4
SNF4 (373 aa)
     
 
  0.633
101251876
Uncharacterized protein; Cystathionine beta-synthase (CBS) family protein (420 aa)
     
 
  0.633
Solyc03g118070.2.1
annotation not available (466 aa)
     
 
  0.633
101262200
SNF1-related protein kinase regulatory subunit gamma 1 (426 aa)
     
 
  0.633
101245800
Uncharacterized protein; Homolog of yeast sucrose nonfermenting 4 (483 aa)
     
 
  0.633
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (9%) [HD]