STRINGSTRING
Solyc01g013890.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g013890.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g013890.1.1Uncharacterized protein (277 aa)    
Predicted Functional Partners:
Solyc03g118640.2.1
Uncharacterized protein (1343 aa)
   
  0.812
Solyc12g099440.1.1
Uncharacterized protein (727 aa)
   
  0.785
Solyc12g007170.1.1
Uncharacterized protein (724 aa)
   
  0.785
Solyc08g068390.2.1
Uncharacterized protein (710 aa)
   
  0.785
Solyc07g019670.2.1
Uncharacterized protein (723 aa)
   
  0.785
Solyc06g009160.2.1
Uncharacterized protein (732 aa)
   
  0.785
Solyc01g066620.2.1
Uncharacterized protein (713 aa)
   
  0.785
Solyc10g076250.1.1
Uncharacterized protein (478 aa)
   
  0.693
Solyc04g054310.2.1
Mitochondrial alanine-glyoxylate transaminase (473 aa)
   
  0.693
Solyc08g065220.2.1
Putative glycine decarboxylase p-protein (1036 aa)
     
  0.660
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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