• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc01g013950.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g013950.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g013950.1.1annotation not available (170 aa)    
Predicted Functional Partners:
Solyc11g021130.1.1
annotation not available (285 aa)
   
 
  0.716
Solyc04g049260.1.1
annotation not available (166 aa)
   
 
  0.716
Solyc00g026870.1.1
annotation not available (465 aa)
   
 
  0.611
rps16
30S ribosomal protein S16 (132 aa)
   
 
  0.557
Solyc03g114050.2.1
Ribosomal protein L29 family protein (182 aa)
     
 
  0.529
101252107
C2H2 zinc-finger protein SERRATE (SE) (748 aa)
     
 
  0.526
Solyc04g014390.2.1
Mitochondrial ribosomal protein L51/S25/CI-B8 family protein (175 aa)
     
 
  0.526
101249096
Mitochondrial 28S ribosomal protein S29-related (452 aa)
     
 
  0.522
101256642
Ribosomal protein L23/L15e family protein (188 aa)
     
 
  0.509
101245574
annotation not available (214 aa)
   
      0.469
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (13%) [HD]