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STRINGSTRING
Solyc01g017330.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g017330.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g017330.1.1annotation not available (138 aa)    
Predicted Functional Partners:
Solyc02g011760.1.1
Uncharacterized protein; Iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding (94 aa)
     
 
  0.892
Solyc09g015280.1.1
Uncharacterized protein; Tetratricopeptide repeat (TPR)-like superfamily protein (149 aa)
   
 
  0.851
3950398
Cytochrome b6; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions (213 aa)
     
 
  0.841
ycf3
Photosystem I assembly protein Ycf3; Essential for the assembly of the photosystem I (PSI) complex. May act as a chaperone-like factor to guide the assembly of the PSI subunits (84 aa)
   
 
  0.819
petA
Cytochrome f; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions (320 aa)
   
 
  0.799
Solyc05g023720.1.1
annotation not available (174 aa)
   
 
  0.797
psaD
Photosystem I reaction center subunit II, chloroplastic; PsaD can form complexes with ferredoxin and ferredoxin- oxidoreductase in photosystem I (PS I) reaction center. PSAD may encode the ferredoxin-docking protein (208 aa)
       
 
  0.772
3950409
Photosystem II CP47 reaction center protein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water-plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbB subfamily (553 aa)
   
   
  0.743
Solyc01g017220.1.1
Uncharacterized protein; ATP synthase epsilon chain (96 aa)
     
   
  0.733
Solyc09g015300.1.1
annotation not available (118 aa)
 
 
  0.718
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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