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STRINGSTRING
Solyc01g017400.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g017400.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g017400.1.1annotation not available (217 aa)    
Predicted Functional Partners:
DDTFR19
60S ribosomal protein L29; Ripening regulated protein DDTFR19 ; Belongs to the eukaryotic ribosomal protein eL29 family (60 aa)
     
 
  0.976
101261490
annotation not available (314 aa)
     
      0.966
101268580
annotation not available (148 aa)
   
 
  0.966
101265118
annotation not available (148 aa)
   
 
  0.966
rps16
30S ribosomal protein S16 (132 aa)
   
 
  0.965
RPL3
Ribosomal protein L3 ; Belongs to the universal ribosomal protein uL3 family (389 aa)
   
 
  0.963
Solyc01g103510.2.1
R-protein L3 B; Belongs to the universal ribosomal protein uL3 family (443 aa)
   
 
  0.963
RPS25
40S ribosomal protein S25 ; Belongs to the eukaryotic ribosomal protein eS25 family (108 aa)
     
 
  0.962
101261290
annotation not available (108 aa)
     
 
  0.962
101265312
annotation not available (120 aa)
     
 
  0.961
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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