• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc01g034150.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g034150.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g034150.2.1Uncharacterized protein; Y-family DNA polymerase H (713 aa)    
Predicted Functional Partners:
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
     
 
  0.993
Solyc01g099220.2.1
DNA polymerase; Recovery protein 3 (1947 aa)
     
 
  0.977
101248333
DNA-binding HORMA family protein (202 aa)
     
 
  0.936
Solyc01g107510.2.1
DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3’-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents (1045 aa)
     
 
0.928
101258997
Uncharacterized protein; DNA-directed DNA polymerases (542 aa)
       
 
  0.917
101249845
Uncharacterized protein; Restriction endonuclease, type II-like superfamily protein (953 aa)
     
 
  0.914
101256637
DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (1086 aa)
     
 
  0.898
101055576
DNA polymerase alpha catalytic subunit (1561 aa)
     
 
  0.891
Solyc06g073780.2.1
Structural maintenance of chromosomes protein; SMC3 (1229 aa)
   
 
  0.890
101255123
Protein kinase superfamily protein (1016 aa)
     
 
  0.845
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (15%) [HD]