STRINGSTRING
Solyc01g050020.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g050020.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g050020.1.1Uncharacterized protein (94 aa)    
Predicted Functional Partners:
Solyc07g009000.1.1
Uncharacterized protein (124 aa)
   
          0.522
Solyc10g045230.1.1
Uncharacterized protein (99 aa)
   
          0.521
Solyc10g018840.1.1
Uncharacterized protein (86 aa)
   
          0.521
Solyc12g038080.1.1
Uncharacterized protein (74 aa)
   
          0.519
Solyc11g045260.1.1
Uncharacterized protein (127 aa)
   
          0.519
Solyc09g016930.1.1
Uncharacterized protein (132 aa)
   
          0.516
Solyc01g011480.1.1
Uncharacterized protein (85 aa)
   
          0.516
psbC
Photosystem II CP43 chlorophyll apoprotein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water-plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation (87 aa)
   
          0.513
Solyc10g017940.1.1
Uncharacterized protein (200 aa)
   
          0.508
Solyc05g041230.1.1
Uncharacterized protein (98 aa)
   
          0.503
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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