STRINGSTRING
Solyc01g056580.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g056580.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g056580.2.1Uncharacterized protein (386 aa)    
Predicted Functional Partners:
Solyc05g008180.2.1
Uncharacterized protein (353 aa)
     
  0.815
Solyc08g081150.2.1
Uncharacterized protein (536 aa)
         
  0.660
Solyc05g012090.2.1
Dihydropterin pyrophosphokinase-dihydropteroate synthase (512 aa)
         
  0.620
Solyc12g099260.1.1
Uncharacterized protein (608 aa)
         
  0.584
Solyc01g059880.2.1
Uncharacterized protein (608 aa)
         
  0.584
Solyc11g040390.1.1
Uncharacterized protein (819 aa)
         
  0.536
Solyc06g064550.2.1
Uncharacterized protein (919 aa)
         
  0.536
Solyc08g082830.2.1
Uncharacterized protein (731 aa)
         
  0.519
Solyc07g065590.2.1
Nicotinate-nucleotide adenylyltransferase (251 aa)
       
  0.476
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
           
  0.448
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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