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STRINGSTRING
Solyc01g060040.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g060040.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g060040.2.1annotation not available (1020 aa)    
Predicted Functional Partners:
Solyc07g006820.2.1
annotation not available (1823 aa)
     
 
  0.913
Solyc06g010200.2.1
annotation not available (1613 aa)
     
 
  0.860
101261865
annotation not available (2043 aa)
     
   
  0.850
Solyc09g010830.2.1
annotation not available (1973 aa)
     
   
  0.850
101255653
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (769 aa)
     
 
  0.820
Solyc03g059420.2.1
Sister chromatid cohesion protein; PHD finger family protein (1620 aa)
     
        0.813
Solyc03g059400.1.1
annotation not available (86 aa)
     
        0.813
Solyc04g049120.2.1
Uncharacterized protein; Duplicated homeodomain-like superfamily protein (1580 aa)
     
 
  0.791
DDB1
DNA damage-binding protein 1; Component of light signal transduction machinery. Involved in fruit pigmentation and fruit nutritional quality. Acts as a negative regulator of fruit pigmentation. Probably acts by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes. Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5 (1095 aa)
     
 
  0.742
Solyc02g091120.2.1
DNA LIGASE 6 (1473 aa)
     
 
  0.687
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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