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STRINGSTRING
Solyc01g060080.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g060080.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g060080.2.1annotation not available (700 aa)    
Predicted Functional Partners:
101262493
CONTAINS InterPro DOMAIN/s- Protein phosphatase 4 core regulatory subunit R2 (InterPro-IPR015267); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other /.../otes - 2996 (source- NCBI BLink) (209 aa)
     
 
  0.972
101263042
annotation not available (305 aa)
     
 
  0.953
101243811
Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (380 aa)
       
 
  0.921
Solyc11g005000.1.1
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknow /.../tion KRTCAP2 (InterPro-IPR018614); Has 141 Blast hits to 141 proteins in 57 species- Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 12 (source- NCBI BLink) (114 aa)
     
      0.710
Solyc07g006250.2.1
Uncharacterized protein; RNA polymerase Rpb7 N-terminal domain-containing protein (102 aa)
     
      0.685
RPA32b
annotation not available (280 aa)
       
 
  0.677
RPA32a
annotation not available (272 aa)
       
 
  0.677
101256634
Uncharacterized protein; Ataxia telangiectasia-mutated and RAD3-related (2728 aa)
     
 
  0.672
Solyc11g008150.1.1
Uncharacterized protein; Kow domain-containing transcription factor 1 (1509 aa)
     
      0.664
101260813
annotation not available (1040 aa)
     
      0.664
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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