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Solyc01g060140.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g060140.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g060140.2.1Uncharacterized protein; Calmodulin-binding transcription factor SR3 (667 aa)    
Predicted Functional Partners:
101259480
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- NEFA-interacting nuclear protein NIP30, N-terminal (InterPro-IPR019331); Has 398 Blast hits to 395 proteins in 139 species- Archae - 0; Bacteria - 6; Metazoa - 193; Fungi - 83; Plants - 36; Viruses - 0; Other Eukaryotes - /.../ource- NCBI BLink) (217 aa)
       
      0.685
101259112
annotation not available (519 aa)
           
  0.563
101254094
Unknown protein; Has 212 Blast hits to 211 proteins in 96 species- Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 91; Plants - 31; Viruses - 0; Other Eukaryotes - 22 (source- NCBI BLink) (324 aa)
           
  0.563
101255065
alpha/beta-Hydrolases superfamily protein (452 aa)
           
  0.563
101246236
Elongator complex protein 3; Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation (565 aa)
           
  0.549
101244843
annotation not available (299 aa)
           
  0.465
101244047
annotation not available (257 aa)
           
  0.465
101256591
annotation not available (350 aa)
           
  0.465
101262267
annotation not available (344 aa)
           
  0.465
101247139
annotation not available (216 aa)
           
  0.459
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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