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Solyc01g067830.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g067830.2.1" - U1 small nuclear ribonucleoprotein C in Solanum lycopersicum
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
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Solyc01g067830.2.1U1 small nuclear ribonucleoprotein C ; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (199 aa)    
Predicted Functional Partners:
Solyc01g094540.2.1
Small nuclear ribonucleoprotein-associated protein (280 aa)
     
  0.984
Solyc02g085420.2.1
Uncharacterized protein (478 aa)
     
  0.976
Solyc09g098390.2.1
Uncharacterized protein (355 aa)
     
  0.976
Solyc03g033600.2.1
Uncharacterized protein (132 aa)
     
  0.975
Solyc02g084020.2.1
Uncharacterized protein (132 aa)
     
  0.975
Solyc02g062240.2.1
Uncharacterized protein (132 aa)
     
  0.975
Solyc06g072280.2.1
Uncharacterized protein (88 aa)
     
  0.973
Solyc03g098470.2.1
Uncharacterized protein (88 aa)
     
  0.973
Solyc09g075130.2.1
Uncharacterized protein (109 aa)
     
  0.972
Solyc09g064660.2.1
Uncharacterized protein (114 aa)
     
  0.972
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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