STRINGSTRING
Solyc01g068370.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g068370.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g068370.2.1Uncharacterized protein (341 aa)    
Predicted Functional Partners:
Solyc03g033470.2.1
Uncharacterized protein (315 aa)
         
    0.900
Solyc12g035870.1.1
Uncharacterized protein (398 aa)
     
  0.896
Solyc10g024470.1.1
Uncharacterized protein (490 aa)
       
  0.821
LHP1
Chromo domain protein LHP1 ; Structural component of heterochromatin involved in gene repression. Recognizes and binds histone H3 tails methylated at ’Lys-9’, leading to epigenetic repression (399 aa)
       
  0.821
RPE1
DNA-directed RNA polymerase V subunit 1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
       
  0.800
Solyc11g065370.1.1
Uncharacterized protein (446 aa)
     
  0.799
Solyc11g067020.1.1
Histone deacetylase (430 aa)
   
  0.789
Solyc09g091440.2.1
Histone deacetylase (498 aa)
   
  0.789
Solyc06g071680.2.1
Histone deacetylase (471 aa)
   
  0.789
Solyc03g112410.1.1
Histone deacetylase (449 aa)
   
  0.789
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (11%) [HD]