STRINGSTRING
Solyc01g079510.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g079510.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g079510.2.1Uncharacterized protein (1667 aa)    
Predicted Functional Partners:
DDB1
DNA damage-binding protein 1 ; Component of light signal transduction machinery. Involved in fruit pigmentation and fruit nutritional quality. Acts as a negative regulator of fruit pigmentation. Probably acts by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes. Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5 (1095 aa)
     
      0.907
Solyc11g062010.1.1
Uncharacterized protein (2667 aa)
     
 
    0.590
Solyc01g094800.2.1
Uncharacterized protein (2236 aa)
     
 
    0.590
Solyc01g079700.2.1
Uncharacterized protein (151 aa)
     
 
    0.590
Solyc03g044140.2.1
Uncharacterized protein (333 aa)
       
      0.548
Solyc02g092640.2.1
Uncharacterized protein (333 aa)
       
      0.548
Solyc02g064700.2.1
Uncharacterized protein (427 aa)
       
      0.548
Solyc06g010200.2.1
Uncharacterized protein (1613 aa)
     
 
    0.504
Solyc06g054560.2.1
Uncharacterized protein (1061 aa)
     
 
    0.430
Solyc02g085390.2.1
Uncharacterized protein (811 aa)
     
 
    0.430
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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