STRINGSTRING
Solyc01g080470.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g080470.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g080470.2.1Uncharacterized protein (221 aa)    
Predicted Functional Partners:
Solyc05g056260.2.1
Uncharacterized protein (342 aa)
   
 
  0.706
Solyc11g068830.1.1
Uncharacterized protein (477 aa)
   
   
  0.684
Solyc07g008950.2.1
Uncharacterized protein (812 aa)
   
   
  0.610
Solyc00g050030.1.1
Annotation not available (702 aa)
   
 
  0.608
rps3
30S ribosomal protein S3, chloroplastic (352 aa)
   
 
  0.591
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
   
 
  0.535
Solyc12g008780.1.1
Uncharacterized protein (293 aa)
   
        0.535
Solyc10g006040.1.1
Uncharacterized protein (365 aa)
   
        0.535
Solyc07g065340.1.1
Uncharacterized protein (331 aa)
   
        0.535
Solyc02g082850.2.1
Uncharacterized protein (356 aa)
   
        0.535
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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