STRINGSTRING
Solyc01g080830.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g080830.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g080830.2.1Uncharacterized protein (180 aa)    
Predicted Functional Partners:
rps3
30S ribosomal protein S3, chloroplastic (352 aa)
   
  0.999
Solyc11g021130.1.1
Ribosomal protein S7 (285 aa)
   
  0.998
Solyc03g025270.2.1
Uncharacterized protein (314 aa)
     
  0.995
Solyc09g083080.2.1
Uncharacterized protein (552 aa)
     
  0.994
Solyc05g055880.2.1
Uncharacterized protein (513 aa)
     
  0.994
Solyc10g078630.1.1
Uncharacterized protein (65 aa)
   
  0.986
Solyc02g021400.1.1
Annotation not available (65 aa)
   
  0.986
Solyc12g096300.1.1
40S ribosomal protein S6 (249 aa)
   
  0.985
Solyc08g074240.2.1
40S ribosomal protein S6 (249 aa)
   
  0.985
Solyc08g006040.2.1
40S ribosomal protein S6 (249 aa)
   
  0.985
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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