• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc01g080830.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g080830.2.1" - Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g080830.2.1Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (180 aa)    
Predicted Functional Partners:
101250547
annotation not available (553 aa)
     
 
  0.993
101261490
annotation not available (314 aa)
     
 
  0.993
Solyc09g083080.2.1
annotation not available (552 aa)
     
 
  0.991
101255995
annotation not available (513 aa)
     
 
  0.991
101252860
annotation not available (198 aa)
   
 
  0.990
Solyc02g069770.2.1
annotation not available (516 aa)
     
 
  0.989
101254131
Transducin family protein / WD-40 repeat family protein (907 aa)
     
 
  0.988
101249976
Alpha-L RNA-binding motif/Ribosomal protein S4 family protein (182 aa)
   
 
  0.988
101258943
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation (1030 aa)
   
 
  0.988
Solyc05g010480.2.1
Transducin family protein / WD-40 repeat family protein (396 aa)
     
 
  0.986
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (14%) [HD]