STRINGSTRING
Solyc01g086990.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g086990.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g086990.2.1Uncharacterized protein (916 aa)    
Predicted Functional Partners:
Solyc12g056080.1.1
Uncharacterized protein (693 aa)
     
0.995
Solyc03g007850.1.1
Uncharacterized protein (673 aa)
     
0.995
CRNKL1
Crooked neck-like protein 1 (664 aa)
     
0.995
Solyc10g055640.1.1
Uncharacterized protein (310 aa)
     
  0.994
Solyc07g052200.1.1
Uncharacterized protein (196 aa)
     
  0.994
cdc5
CDC5-like protein (987 aa)
     
  0.986
Solyc02g078970.2.1
Uncharacterized protein (570 aa)
     
  0.986
Solyc10g050500.1.1
Uncharacterized protein (69 aa)
     
  0.984
Solyc09g090660.2.1
Uncharacterized protein (521 aa)
     
  0.983
Solyc05g051070.2.1
Uncharacterized protein (310 aa)
     
  0.982
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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