STRINGSTRING
Solyc01g087280.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g087280.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g087280.1.1Uncharacterized protein (425 aa)    
Predicted Functional Partners:
Solyc07g065350.1.1
Pectinesterase (357 aa)
       
  0.962
Solyc12g099410.1.1
Pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (559 aa)
   
 
  0.950
Solyc05g054360.2.1
Pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (627 aa)
   
 
  0.950
Solyc01g099940.2.1
Pectinesterase (456 aa)
   
 
  0.950
Solyc01g066360.2.1
Pectinesterase (548 aa)
   
 
  0.950
Solyc12g008530.1.1
Pectinesterase (378 aa)
       
  0.950
Solyc11g051020.1.1
Pectinesterase (266 aa)
       
  0.950
Solyc10g083820.1.1
Pectinesterase (148 aa)
       
  0.950
Solyc10g049380.1.1
Pectinesterase (338 aa)
       
  0.950
Solyc10g049370.1.1
Pectinesterase (346 aa)
       
  0.950
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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