STRINGSTRING
Solyc01g088560.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g088560.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g088560.2.1Uncharacterized protein (208 aa)    
Predicted Functional Partners:
Solyc01g094880.2.1
Uncharacterized protein (1125 aa)
       
  0.963
Solyc02g094090.2.1
Uncharacterized protein (696 aa)
     
  0.957
Solyc12g017570.1.1
Uncharacterized protein (444 aa)
     
 
  0.943
Solyc08g015860.2.1
Uncharacterized protein (444 aa)
     
 
  0.943
GDI1
Rab-GDP dissociation inhibitor (445 aa)
     
 
  0.943
Solyc02g082730.2.1
Uncharacterized protein (552 aa)
     
 
  0.859
Solyc06g060210.1.1
Uncharacterized protein (203 aa)
   
0.750
Solyc07g056150.2.1
Uncharacterized protein (212 aa)
   
0.747
Solyc02g093530.2.1
Uncharacterized protein (211 aa)
   
0.745
Solyc12g011130.1.1
Uncharacterized protein (211 aa)
   
0.743
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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