STRINGSTRING
Solyc01g090200.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g090200.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g090200.2.1Uncharacterized protein (1061 aa)    
Predicted Functional Partners:
Solyc07g018360.2.1
Elongation factor Ts ; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (1048 aa)
   
   
  0.816
Solyc11g039830.1.1
Uncharacterized protein (738 aa)
     
 
  0.806
Solyc03g118170.2.1
Uncharacterized protein (621 aa)
     
 
  0.806
Solyc11g012140.1.1
Uncharacterized protein (1182 aa)
   
   
  0.801
Solyc01g080810.2.1
Uncharacterized protein (1110 aa)
   
   
  0.801
Solyc01g106740.2.1
Uncharacterized protein (669 aa)
   
   
  0.755
Solyc09g008040.2.1
Uncharacterized protein (563 aa)
   
 
  0.717
Solyc10g038080.1.1
Uncharacterized protein (514 aa)
   
   
  0.715
LOC543548
Dehydroquinate dehydratase/shikimate-NADP oxidoreductase (545 aa)
   
   
  0.715
Solyc05g012090.2.1
Dihydropterin pyrophosphokinase-dihydropteroate synthase (512 aa)
         
  0.714
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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