STRINGSTRING
Solyc01g090230.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g090230.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g090230.2.1Uncharacterized protein (633 aa)    
Predicted Functional Partners:
Solyc07g032100.2.1
Coatomer subunit alpha ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network (1219 aa)
     
      0.596
Solyc04g080980.2.1
Coatomer subunit alpha ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network (1218 aa)
     
      0.596
Solyc12g038200.1.1
Uncharacterized protein (519 aa)
       
      0.576
Solyc10g038120.1.1
Uncharacterized protein (391 aa)
       
      0.576
Solyc10g038110.1.1
Uncharacterized protein (95 aa)
       
      0.576
Solyc01g109540.2.1
Coatomer subunit gamma ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (886 aa)
       
      0.576
Solyc01g103480.2.1
Uncharacterized protein (527 aa)
       
      0.576
Solyc01g058380.1.1
Uncharacterized protein (217 aa)
       
      0.576
Solyc07g062150.2.1
Uncharacterized protein (314 aa)
           
  0.448
Solyc05g007070.2.1
Alpha-amylase (892 aa)
       
      0.416
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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