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cMDH protein (Solanum lycopersicum) - STRING interaction network
"cMDH" - Malate dehydrogenase in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cMDHMalate dehydrogenase (334 aa)    
Predicted Functional Partners:
Solyc12g099260.1.1
Uncharacterized protein (608 aa)
   
  0.997
Solyc01g059880.2.1
Uncharacterized protein (608 aa)
   
  0.997
Solyc12g011000.1.1
Citrate synthase (514 aa)
   
  0.982
Solyc07g055840.2.1
Citrate synthase (511 aa)
   
  0.982
Solyc01g073740.2.1
Citrate synthase (474 aa)
   
  0.982
ME1
NADP-dependent malic enzyme, chloroplastic ; The chloroplastic ME isoform decarboxylates malate shuttled from neighboring mesophyll cells. The CO(2) released is then refixed by ribulose-bisphosphate carboxylase. This pathway eliminates the photorespiratory loss of CO(2) that occurs in most plants (640 aa)
   
  0.981
Solyc12g008430.1.1
Malic enzyme (589 aa)
   
  0.975
Solyc08g066360.2.1
Malic enzyme (591 aa)
   
  0.975
Solyc08g013860.2.1
Malic enzyme (626 aa)
   
  0.975
ME2
Malic enzyme (579 aa)
   
  0.975
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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