STRINGSTRING
Solyc01g091010.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g091010.2.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g091010.2.1Uncharacterized protein (218 aa)    
Predicted Functional Partners:
Solyc11g011770.1.1
Uncharacterized protein (462 aa)
           
  0.522
Solyc05g051060.2.1
Uncharacterized protein (284 aa)
           
  0.522
Solyc11g069470.1.1
Uncharacterized protein (841 aa)
           
  0.495
LOC543604
Phantastica (360 aa)
     
   
  0.493
Solyc11g008830.1.1
Uncharacterized protein (230 aa)
           
  0.491
Solyc08g005260.1.1
Uncharacterized protein (361 aa)
           
  0.489
Solyc06g066340.2.1
Uncharacterized protein (291 aa)
           
  0.489
ARF3
Auxin response factor 3 ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (747 aa)
     
   
  0.459
wus
Protein WUSCHEL ; Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity) (272 aa)
           
  0.459
NAM
Goblet; NO APICAL MERISTEM (352 aa)
           
  0.454
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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