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STRINGSTRING
Solyc01g094300.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g094300.1.1" - annotation not available in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g094300.1.1annotation not available (217 aa)    
Predicted Functional Partners:
RPE1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
     
 
  0.981
101261490
annotation not available (314 aa)
     
 
  0.972
101246325
Transducin family protein / WD-40 repeat family protein (871 aa)
     
 
  0.964
Solyc03g120080.2.1
Periodic tryptophan protein 2 (666 aa)
     
 
  0.961
101258943
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation (1030 aa)
     
 
  0.960
BMS1
Uncharacterized protein; P-loop containing nucleoside triphosphate hydrolases superfamily protein (1231 aa)
     
 
  0.960
101254131
Transducin family protein / WD-40 repeat family protein (907 aa)
     
 
  0.957
Solyc05g010480.2.1
Transducin family protein / WD-40 repeat family protein (396 aa)
     
 
  0.954
101251902
Nucleotide binding;protein binding (452 aa)
     
 
  0.953
101267415
Small nuclear ribonucleoprotein family protein (98 aa)
     
 
  0.952
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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