STRINGSTRING
Solyc01g094540.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g094540.2.1" - Small nuclear ribonucleoprotein-associated protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g094540.2.1Small nuclear ribonucleoprotein-associated protein (280 aa)    
Predicted Functional Partners:
Solyc10g081370.1.1
Uncharacterized protein ; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (88 aa)
     
  0.997
Solyc09g075130.2.1
Uncharacterized protein (109 aa)
     
  0.995
Solyc11g005370.1.1
Uncharacterized protein (97 aa)
     
  0.995
Solyc10g078450.1.1
Uncharacterized protein (44 aa)
     
  0.994
Solyc06g073700.2.1
Uncharacterized protein (98 aa)
     
  0.994
Solyc09g009640.2.1
Uncharacterized protein (99 aa)
     
  0.994
Solyc09g090660.2.1
Uncharacterized protein (521 aa)
     
  0.993
Solyc09g064660.2.1
Uncharacterized protein (114 aa)
     
  0.992
Solyc06g084310.2.1
Annotation not available (114 aa)
     
  0.992
Solyc02g078970.2.1
Uncharacterized protein (570 aa)
     
  0.991
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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