• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc01g094950.2.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc01g094950.2.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc01g094950.2.1annotation not available (334 aa)    
Predicted Functional Partners:
Solyc11g007750.1.1
Unknown protein; CONTAINS InterPro DOMAIN/s- Uncharacterised protein family UPF0066 (InterPro-IPR001378); Has 30201 Blast hits to 17322 proteins in 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; /.../ Eukaryotes - 2996 (source- NCBI BLink) (372 aa)
           
  0.745
101251313
annotation not available (437 aa)
           
  0.651
101255619
annotation not available (437 aa)
           
  0.651
Solyc12g019420.1.1
annotation not available (253 aa)
           
  0.588
Solyc08g014440.2.1
annotation not available (379 aa)
           
  0.588
Solyc02g092460.2.1
annotation not available (287 aa)
           
  0.588
101262532
Unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast thylakoid membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; Has 30201 Blast hits to 17322 prot /.../n 780 species- Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source- NCBI BLink) (143 aa)
           
  0.561
101247164
annotation not available (1270 aa)
           
  0.517
Solyc03g026040.2.1
Leucine-rich repeat transmembrane protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family (1241 aa)
           
  0.517
101244733
annotation not available (611 aa)
           
  0.491
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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