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STRINGSTRING
104649423 protein (Solanum lycopersicum) - STRING interaction network
"104649423" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
104649423annotation not available (967 aa)    
Predicted Functional Partners:
109121108
annotation not available (272 aa)
       
      0.706
101245972
annotation not available (341 aa)
       
      0.706
Solyc03g123840.2.1
Uncharacterized protein; RNA-binding (RRM/RBD/RNP motifs) family protein (320 aa)
       
      0.706
101244425
RING/U-box superfamily protein (276 aa)
       
      0.706
Solyc12g017420.1.1
ABC transporter family protein (705 aa)
           
  0.664
104644277
Unknown protein; CONTAINS InterPro DOMAIN/s- Uncharacterised protein family UPF0546 (InterPro-IPR018908); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Euk /.../s - 339 (source- NCBI BLink) (132 aa)
           
  0.664
101248675
annotation not available (319 aa)
           
  0.664
101252812
Unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; Has 411 Blast hits to 380 proteins in 121 species- Archae - 4; Bacteria - 107; Metazoa - 85; Fu /.../29; Plants - 59; Viruses - 0; Other Eukaryotes - 127 (source- NCBI BLink) (148 aa)
           
  0.664
101261788
Uncharacterized protein; NagB/RpiA/CoA transferase-like superfamily protein; Belongs to the eIF-2B alpha/beta/delta subunits family (620 aa)
       
      0.625
101246493
annotation not available (462 aa)
       
      0.625
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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